Albums:
- The "New" Look [Checker LPS-2997, 1965]
- Free [Paula 2203, 1972] - UK Reissue + 4 Rare Bonus Tracks in standard jewel case
- Sister of Soul [Huub 33024, July 1991]
- Rescued: The Best of Fontella Bass [Chess/MCA 9335, March 1992] compilation album with Bobby McClure, Maurice White, Leonard Caston, Lester Bowie, Oliver Sain, Bunky Green, The Dells
- No Ways Tired [Elektra 79357, February 1995] with Lester Bowie, David Sanborn, Harvey Brooks
- Art Ensemble of Chicago [Musidisc 500172, November 1995]
- Now That I Found a Good Thing [Jewel 5060, August 1996]
- Travellin' [Justin Time 157, April 2001] with David Peaston (her brother}, Bahnamous Lee Bowie (her son), and Tracy Mitchell (her son-in-law)

Martha Bass / Fontella Bass / David Peaston:
- From the Root to The Source [Soul Note 1006, 1980] gospel album with Amina Claudine Myers, her brother David Peaston, and mother Martha Bass
- Promises, a Family Portrait of Faith [Sparrow 7506, 1991] gospel album with her brother David Peaston and mother Martha Bass

The World Saxophone Quartet with Fontella Bass:
- Breath Of Life [Elektra/Nonesuch 79309, June 1994]

The Art Ensemble of Chicago:
- Les Stances A Sophie [Nessa 4, July 1970]
- Phase One [America 6116, February 1971]
- The Art Ensemble of Chicago With Fontella Bass [America 6117, 1973] recorded in Paris, France
- Live Part One [BYG 2401, 197?]
- Full Force [ECM 829197, January 1980]

She appears on the following albums:
Lester Bowie - The Great Pretender [ECM 829369, June 1981]
Little Milton - Raise a Little Sand [Red Lightnin 0011, 1982] with Ike Turner, Oliver Sain, Rev. Cleophus Robinson
Lester Bowie - All the Magic! [ECM 810625, June 1982] 2 CD set
Lester Bowie - Works [ECM 837274, 1989]
Martha Bass - Martha Sings Mahalia [Chess 91534, 1990] tribute to Mahalia Jackson
Mother Willie Mae Ford Smith - Mother Smith And Her Children [Spirit Feel 1010, May 1990]
Little Milton - Welcome to the Club: The Essential Chess Recordings [MCA 9350, August 1994] 2 CD
Little Milton - Greatest Hits (Chess 50th Anniversary Collection) [MCA/Chess 9386, June 1997]
Various Artists - Felix Hernandez presents the Rhythm Revue [TVT 4010, September 1997] 3 CD Box Set
David Murray - Speaking in Tongues [Justin Time 118, May 1999]
Various Artists - Back to Black: 1900-1999 [Universal 541518, February 2001] 10 CD Box Set
Various Artists - Soul Spectacular! The Greatest Soul Hits of All Time [Rhino 78300, February 2002] 4 CD Box Set
Various Artists - John Lennon's Jukebox [EMI, April 2004] 2 CD set

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